I wonder if that's why the primary RN submarine base in Malaya was at HMS Pelandok (Georgetown, on Penang Island) rather than Sembawang.
AB
Sorry but I'm a bit confused. How did you arrive at this information?
AFAIK HMS Pelandok was the Malayan Royal Navy Volunteer Reserve training base and barracks within the Singapore Naval Base.
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Penang was never "the primary RN submarine base in Malaya" so far as I am aware. In fact quickly looking through the movements of individual submarines in the Far East after 3 Sept 1939, I can only find two references to them using Penang.
HMS Odin
2 Sep 1939
HMS Odin (Lt.Cdr. R.W. Moir, RN) departed Singapore for Penang. (1)
3 Sep 1939
HMS Odin (Lt.Cdr. R.W. Moir, RN) arrived at Penang. (1)
7 Sep 1939
HMS Odin (Lt.Cdr. R.W. Moir, RN) conducted exercises off Penang. (1)
9 Sep 1939
HMS Odin (Lt.Cdr. R.W. Moir, RN) departed Penang for Singapore. (1)
10 Sep 1939
HMS Odin (Lt.Cdr. R.W. Moir, RN) arrived at Singapore. (1)
HMS Otus
2 Sep 1939
HMS Otus (Lt.Cdr. E.C.F. Nicolay, RN) departed Singapore for Penang. (1)
3 Sep 1939
HMS Otus (Lt.Cdr. E.C.F. Nicolay, RN) arrived at Penang. (1)
7 Sep 1939
HMS Otus (Lt.Cdr. E.C.F. Nicolay, RN) conducted exercises off Penang. (1)
9 Sep 1939
HMS Otus (Lt.Cdr. E.C.F. Nicolay, RN) departed Penang for Singapore. (1)
10 Sep 1939
HMS Otus (Lt.Cdr. E.C.F. Nicolay, RN) arrived at Singapore. (1)
Inter-war the main Far East sub base was at Hong Kong with the 4th flotilla with O/P/R boats and a couple of Cachalot minelayers based on the depot ship Medway. These boats were gradually withdrawn in 1939/40 mostly to the Med. Refits would usually be carried out there or at Singapore.
After Medway and this flotilla were withdrawn it was Dec 1941 / Jan 1942 before any further subs were sent East of Suez. They were Trusty & Truant.
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Edit:- Does the confusion about RN use of Penang as a sub base come from Axis use of it? On the basis that if the Axis used it, they must have taken over RN facilities?
Following its capture in Dec 1941, the Japanese immediately began to develop facilities there. That meant moving material across the Malayan peninsula. They didn't open the Malacca Strait to their shipping until Sumatra was invaded, which started at the southern end on 14 Feb 1942. In March 1942 the IJN moved its 8th Submarine Squadron from Kwajalein to Penang to allow its submarines in the Indian Ocean.
en.wikipedia.org
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Sabang was also used by the IJN as a sub base.
Later in WW2 Penang was used by German U-boats operating in the IO.
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History of the Axis base here.