Ok Tomo, you seem to be moving the bar a bit here, and I'm not sure precisely what you are getting at? You tell me why they (obviously quite on purpose) created low altitude fighters with low-altitude rated engines?
Or are you claiming that they didn't?
They certainly did, the low-altitude versions of Merlins are listed at the tables I've posted at post #170 here.
Low-altitude Merlins were created in order to improve performance down low. These come in handy once the threat emerged - Fw 190s armed with bombs, trying to make hit & run attacks against the targets in UK proper. Typhoon was barely available and beset with problems, Griffon was running late.
Low-alt Merlins were also used on 'hooked Spitfires' and Seafires, where improved low-alt power obviously improved take-off properties and enabled carrying more, as well (but not exclusively) on bomb-armed Spitfires.
Low-alt Spitfires usualy sported clipped wings, in effort to improve rate of roll. The Spitfires VIII and XI were produced in LF, F and HF versions, actual difference being the sub-type of 2-stage Merlin aboard. Usually the LF (L for low altitude) was with clipped wings, HF (H for hi-alt) was with extended wingtips; F was with standard wings.