wuzak
Captain
There is little doubt that the "BIG" twin heavy bomber was a bad idea for the very reason you state. However the Merlin was a 27 liter engine, the Griffon a 36 liter engine and the Vulture was a 42.5 liter engine. With it's smaller cylinders, in theory the Vulture should have been able to turn more rpm. With any given fuel the Vulture should have been able to develop much more power than the other two. All things being equal, which they obviously were not.
The Merlin had more development time in it, and had its own problems - but many of these were pre-war. They were trying to fix the Vulture in a time where they needed the resources for the Merlin and Griffon. The Griffon seems to have had a relatively trouble free development period - only 2 or 3 years before it was in production.
The Vulture should have easily been 2000hp+, and by the time the Merlin was pumping out 2000hp (1943) the Vulture probably would have been capable of much more. At the same BMEP as a Merlin with 2000hp at 3000rpm a Vulture would be giving well over 3000hp. Of course that needed, like the Merlin had before it, the reliability problems sorted before extra power could be sought.