The only area where the Bf-109 can be said to be markedly superior to the Spitfire is in climb rate, the Bf-109 always had this advantage.
Whilst the early 109s generally had the advantage, the Spitfire held a decided advantage from the LF IX onwards (introduced to service in early 1943). About the only 109 that could climb with the LF IX were the models introduced in late 1944, and by that time the Spitfire IX was running on 150 octane fuel, and had a better climb rate than the 109 ever managed.
Even the 109K4, running on C3 fuel and MW 50, only managed to roughly equal the Spitfire IXs early 1943 climb performance. And the K4 only ran on C3 fuel and MW50 from March 1945, and in limited numbers.