Thanks for the overview.
The Raiden was, in many things, sharing it's issues with, not just Japanese hi-performance aircraft. Ie. it took time for the late war models to get into mass production. Not really some production, if we compare that with other major beligerents. Further, the Raiden was Japanese plane to introduce fan cooled engine, along with extension shaft, plus it was 1st to introduce laminar flow wings.
We can compare Raiden with Fw-190, Typhoon, P-47B, La fighters - they all have had issues, that were threatenning to cancel or sidetrack whole programs. The respective countries did have suitable replacements to hold the line by the time the bugs were ironed out. For the Japanese, the Zeroes and Oscars were holding the line, so the lack of suitable new-generation fighters was harming the Japanese much more than it was situation with other countries.
The claim Raiden was 'not meeting specifications' demands: 1st that we know specifications and, 2nd, that we know what kind of performance the Raiden was really offering. Since the Raiden was used to ward off B-29s, I'd say that it's performance was decent, at least. TAIC manual gives 407mph for 'Jack 11'.