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The most deadly weapon in terms of ships damaged was the japanese kamikaze,
So will a 12,000lb Tallboy, as Tirpitz Lutzow found out.
Large scale Hs.293 attacks might be worse then large scale Kamikaze attacks during the Battle for Okinawa as the weapon was launched outside AA range.
More deadly than the Ju 87 throughout 1940 and then on to the Mediterranean? The Kamikaze may have had a lot of targets but they only operated for a short time.
The best weapon in terms of the original question has to be some kind of "stand off" weapon like the Fritz X.
Steve
Ju-87 normally carried a 1,000kg AP bomb for naval attack. That will penetrate battleship armor.