If two stages were a setting, two stages plus two speeds would equal four settings. Unless there was some way to flip the second stage off, you have two settings.
First supercharger was used first than the second supercharger was added inline, than high speed for the second supercharger so really only three settings. Only the second superchager was dual Speed. This video explains it well starting at two minutes
For the 2-stage superchaged versions of the R-2800 and R-1830 as used during the ww2:
Engine-stage supercharger was always turning if the crankshaft was turning - IOW, single speed only for that stage. The auxiliary stage was de-clutched in low altitude, thus it used no engine power to turn; all supercharging was done by engine-stage S/C.
Above ~5000 ft, the aux S/C was clutched in, using the 1st set of gears (1st speed). Incoming air was 1st compressed by aux stage, than by engine-stage - ie. 2-stage supercharging. Above ~20000 ft, the aux S/C was shifted into second gear (2ns speed now), again 2 stages of supercharging.
So we have a combination of 1 stage being just with 1 speed gearing, and 2nd stage being with 2 speed gearing + neutral setting. What we can make from the 'apples + oranges' equation?