What about the MC202, RE 2001 and the JU 88? I would rate these three as better than what the IJN could bring to fight. The Italian tri motors were also pretty good.
MC 202 was not involved in the early engagements. It was good, but like the 109, very short legged. Was it better than a Zero? I don't think so. My point was that most of the British convoys were up against much older Italian types, including the tri-motors. Re 2001? Sure, nice fighter... they only made 237 of them though and they were only operational in a couple of areas. Some of them did attack Malta.
All of the Japanese fighters, pretty much, were A6M and Ki-43, of a quality sufficient to be at least slightly superior to all of the available Allied fighters in the Pacific. In the MTO the majority of the fighters available to the Axis were obsolescent types in comparison. All of the Japanese bombers were proven ship-killers. Only a few of the Axis ones were. All of the Japanese aircraft had very good range. In the MTO, only a few of the Axis strike aircraft did and none of their fighters had good range.
Ju 88 was a good bomber overall but for ASW? I think I'd rather go with a G4M. You could argue the point, but they didn't have that many Ju 88s operational in the Med during most of those convoy fights. The main ship killer for the Axis in the MTO was the Stuka but it was very short ranged. Second most important was probably the SM.79 (Trimotor) which did kill ships but always took heavy losses.