along with the fact that its tendency to kill pilots and destroy itself on takeoffs and landings
Hm, a bit of a generalisation. Yes, it could be tricky to land, but its worst issue was taxiing whilst rolling in after landing when it had a tendency to ground loop if not handled correctly, but a problem the LW suffered was training rather than the aeroplane being a killer. Let's not get into 'narrow undercarriage' - the Spitfire's was narrower and it didn't suffer any more than the Bf 109. I'd describe the Me 163 as a pilot killer, but not the Bf 109.
Agree with the A6M being both over and underrated. It was a very good design when it first appeared with many novel features for its time (few fighters in 1940 had washout on their wings) and wasn't structurally weak, contrary to common opinion, but the myths that surrounded it didn't help its cause once those were exploded. That it was overtaken in performance by more modern aircraft as the war went on was a given, but that wasn't the Zero's fault that it was still in service when it should have been succeeded, besides, even at the very end of the war, Allied pilots were still being warned not to dogfight with a Zero at low speed. That says something positive about it.
The Problem with the Stuka was the same as the Zero, the perception didn't match reality once the clouds of myth evaporated. It was slow, as were most dive bombers - the Lancaster Mk.I had a faster cruise speed than the Ju 87B, 210mph (Aircraft of the RAF since 1918, Thetford) versus 174mph (German Aircraft of WW2, Smith & Kay, both Putnam), which made it vulnerable in a high threat environment.
The Bf 110 can be included in this - it was another good design and despite the initial specification as a Kampfzerstorer being found wanting in practice, the type remained in service longer than it should, but it performed well as a multi-role fighter throughout the rest of the war, specifically as a night fighter.